# "Reference" referrs to the Reference Class (usually "Sequence") that # is the top-level feature in the feature hierarchy. You must enter # the MOBY Namespace acting as an identifiers for these entries. # For example, if the database FREF column for a DNA record refers to # its EMBL accession then your moby namespace is "EMBL" # for a current list of all valid MOBY namespaces browse to: # http://mobycentral.cbr.nrc.ca/cgi-bin/types/Namespaces # # e.g. Reference = EMBL # # (for the demonstration Yeast database # use Reference = SGD_CHROMOSOME_ID) Reference = EMBL # your authURI is some URN that identifies you as a service provider # it can be anything unique to your hostname (e.g. your hostname!) # # e.g. authURI = your.domain.com authURI = # your contactEmail is some email address that will be associated with # any services, objects, namespaces, etc. that you register in # the MOBY Central web service registry. # # e.g. contactEmail = yourname@your.domain.com contactEmail = # your CGI_URL is the URL representing your servername and path to the # cgi-bin (or equivalent) folder into which you are installing # the gbrowse executables. # # e.g. CGI_URL = 'http://your.domain.com/cgi-bin/' CGI_URL = [Namespace_Class_Mappings] # the rest of this file simply maps MOBY Namespaces to the names # that you use internally in your database. For example, things that # you call "Gene", may correspond to Flybase genes, or Yeast genes, or # some other gene, so you must specify exactly the MOBY Namespace # (data type) you are referring to so that services can find you when # they have the proper identifier in-hand. # the format of this section is simply: # # MOBY_Namespace = GFF Groupname ('Class') # # e.g.: (these mappings are appropriate for the demonstration yeast DB) # # SGD_LOCUS = Gene # SGD_ORF = ORF