CircaNet

Circadian-related Genes and Networks

PER3

period circadian regulator 3
CGDB
CircaDB
Publication
RhythmicDB
Gene Information
SymbolPER3
Gene ID8863
HGNC IDHGNC:8847
Ensembl IDENSG00000049246
TypePROTEIN_CODING
LocationChr 1
Summary

This gene is a member of the Period family of genes and is expressed in a circadian pattern in the suprachiasmatic nucleus, the primary circadian pacemaker in the mammalian brain. Genes in this family encode components of the circadian rhythms of locomotor activity, metabolism, and behavior. This gene is upregulated by CLOCK/ARNTL heterodimers but then represses this upregulation in a feedback loop using PER/CRY heterodimers to interact with CLOCK/ARNTL. Polymorphisms in this gene have been linked to sleep disorders. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2014]

Transcript Expression
Protein Expression
Domain Architecture
Interaction Network (Top 50)
Input Gene
Partner Gene
Thicker edge = Higher Score
Genetic Variants Total: 272
S.No.LocationMutationAA ChangeSignificanceClassFreq (gnomAD)
1 1:7784912 G T R/L (12) Uncertain_significance likely_benign 5.24921E-5
2 1:7784929 G T A/S (18) Likely_benign likely_benign 0.0011417
3 1:7784950 G A E/K (25) Uncertain_significance likely_benign 6.56676E-6
4 1:7784970 C A F/L (31) Uncertain_significance likely_pathogenic 6.56745E-6
5 1:7784978 A G Q/R (34) Uncertain_significance likely_benign NA
6 1:7784980 A G R/G (35) Uncertain_significance likely_benign NA
7 1:7784996 G C S/T (40) Uncertain_significance likely_benign NA
8 1:7785445 C A Q/K (45) Uncertain_significance likely_benign 0.000275605
9 1:7785483 G C M/I (57) Uncertain_significance ambiguous NA
10 1:7785510 C G F/L (66) Uncertain_significance likely_pathogenic 1.31351E-5
11 1:7785515 C T S/L (68) Uncertain_significance likely_benign 1.97006E-5
12 1:7785523 C T R/C (71) Uncertain_significance likely_benign 1.97044E-5
13 1:7785544 G C D/H (78) Uncertain_significance ambiguous 4.59734E-5
14 1:7785550 C T L/F (80) Uncertain_significance likely_pathogenic NA
15 1:7785554 A G N/S (81) Uncertain_significance likely_benign NA
16 1:7785565 C T R/C (85) Uncertain_significance likely_benign 0.000118205
17 1:7786784 A G Y/C (113) Uncertain_significance likely_benign 6.56745E-6
18 1:7786788 T A S/R (114) Uncertain_significance ambiguous 1.31351E-5
19 1:7786807 A G I/V (121) Uncertain_significance likely_benign NA
20 1:7786810 G A A/T (122) Uncertain_significance likely_benign 2.62715E-5
21 1:7788093 A G I/V (147) Likely_benign likely_benign NA
22 1:7788109 C T A/V (152) Uncertain_significance likely_benign 4.59655E-5
23 1:7788123 C T R/C (157) Likely_benign likely_benign 6.56651E-6
24 1:7788124 G A R/H (157) Uncertain_significance likely_benign 1.31263E-5
25 1:7788142 C T A/V (163) Uncertain_significance likely_benign 5.24976E-5
26 1:7788169 C T A/V (172) Uncertain_significance likely_benign NA
27 1:7788180 A T M/L (176) Uncertain_significance likely_benign 0.000111656
28 1:7788193 A G Y/C (180) Uncertain_significance likely_benign 1.97003E-5
29 1:7788195 G A A/T (181) Likely_benign likely_benign 0.000275656
30 1:7788196 C T A/V (181) Uncertain_significance likely_benign 0.000104994
31 1:7793969 A C Y/S (202) Uncertain_significance NA NA
32 1:7793969 A C Y/S (201) Uncertain_significance likely_benign NA
33 1:7793984 T G V/G (207) Uncertain_significance NA 6.5672E-6
34 1:7793984 T G V/G (206) Uncertain_significance likely_benign 6.5672E-6
35 1:7793995 T G F/V (211) Uncertain_significance NA 6.56668E-6
36 1:7793995 T G F/V (210) Uncertain_significance ambiguous 6.56668E-6
37 1:7798562 C G P/A (228) Uncertain_significance NA 6.56651E-5
38 1:7798562 C G P/A (227) Uncertain_significance likely_benign 6.56651E-5
39 1:7798574 A G I/V (232) Uncertain_significance NA 0.00010498
40 1:7798574 A G I/V (231) Uncertain_significance likely_benign 0.00010498
41 1:7798577 C G P/A (233) Uncertain_significance NA 1.97013E-5
42 1:7798577 C G P/A (232) Uncertain_significance ambiguous 1.97013E-5
43 1:7798637 C G L/V (253) Uncertain_significance NA NA
44 1:7798637 C G L/V (252) Uncertain_significance likely_benign NA
45 1:7798670 G A E/K (264) Uncertain_significance NA NA
46 1:7798670 G A E/K (263) Uncertain_significance likely_benign NA
47 1:7801115 C T P/S (266) Uncertain_significance NA 6.57834E-6
48 1:7801115 C T P/S (265) Uncertain_significance ambiguous 6.57834E-6
49 1:7801125 C T P/L (269) Uncertain_significance NA NA
50 1:7801125 C T P/L (268) Uncertain_significance likely_benign NA
51 1:7803060 C G L/V (296) Uncertain_significance NA 0.000118118
52 1:7803060 C G L/V (295) Uncertain_significance likely_benign 0.000118118
53 1:7803073 C T P/L (300) Uncertain_significance NA NA
54 1:7803073 C T P/L (299) Uncertain_significance likely_pathogenic NA
55 1:7803763 A G I/V (351) Likely_benign NA NA
56 1:7803763 A G I/V (350) Likely_benign likely_benign NA
57 1:7803832 C T R/W (374) Uncertain_significance NA 9.18744E-5
58 1:7803832 C T R/W (373) Uncertain_significance likely_benign 9.18744E-5
59 1:7803845 G A R/Q (378) Uncertain_significance NA 6.56668E-6
60 1:7803845 G A R/Q (377) Uncertain_significance likely_benign 6.56668E-6
61 1:7808909 G A D/N (385) Uncertain_significance NA NA
62 1:7808909 G A D/N (384) Uncertain_significance likely_benign NA
63 1:7808988 T C L/P (411) Uncertain_significance NA 6.56651E-6
64 1:7808988 T C L/P (410) Uncertain_significance likely_pathogenic 6.56651E-6
65 1:7809893 C G P/A (415) Conflicting_classifications_of_pathogenicity NA 0.00494712
66 1:7809893 C G P/A (414) Conflicting_classifications_of_pathogenicity ambiguous 0.00494712
67 1:7809900 A G H/R (417) Conflicting_classifications_of_pathogenicity NA 0.00494731
68 1:7809900 A G H/R (416) Conflicting_classifications_of_pathogenicity likely_benign 0.00494731
69 1:7809908 G A V/M (420) Benign NA 0.00761781
70 1:7809908 G A V/M (419) Benign likely_benign 0.00761781
71 1:7809928 C A S/R (426) Uncertain_significance NA NA
72 1:7809928 C A S/R (425) Uncertain_significance likely_pathogenic NA
73 1:7809968 G A A/T (440) Uncertain_significance NA 5.249E-5
74 1:7809968 G A A/T (439) Uncertain_significance likely_benign 5.249E-5
75 1:7810008 C T T/M (453) Uncertain_significance NA 3.28373E-5
76 1:7810008 C T T/M (452) Uncertain_significance likely_benign 3.28373E-5
77 1:7810457 A G Y/C (464) Likely_benign NA 0.000124669
78 1:7810457 A G Y/C (463) Likely_benign likely_benign 0.000124669
79 1:7810510 A G M/V (482) Uncertain_significance NA 0.000249534
80 1:7810510 A G M/V (481) Uncertain_significance likely_benign 0.000249534
81 1:7810523 C T S/L (486) Uncertain_significance NA 2.62684E-5
82 1:7810523 C T S/L (485) Uncertain_significance likely_benign 2.62684E-5
83 1:7810529 A C K/T (488) Uncertain_significance NA NA
84 1:7810529 A C K/T (487) Uncertain_significance likely_benign NA
85 1:7810547 G A R/H (494) Uncertain_significance NA 2.62702E-5
86 1:7810547 G A R/H (493) Uncertain_significance likely_benign 2.62702E-5
87 1:7810559 A G N/S (498) Uncertain_significance NA 2.62809E-5
88 1:7810559 A G N/S (497) Uncertain_significance likely_benign 2.62809E-5
89 1:7810577 C T A/V (504) Likely_benign NA 3.94203E-5
90 1:7819306 C A S/Y (515) Uncertain_significance NA 1.96993E-5
91 1:7819306 C A S/Y (507) Uncertain_significance likely_benign 1.96993E-5
92 1:7819336 T C V/A (525) Uncertain_significance NA 3.9399E-5
93 1:7819336 T C V/A (517) Uncertain_significance likely_benign 3.9399E-5
94 1:7819341 A G T/A (527) Likely_benign NA 0.00141087
95 1:7819341 A G T/A (519) Likely_benign likely_benign 0.00141087
96 1:7819356 G T D/Y (532) Uncertain_significance NA NA
97 1:7819356 G T D/Y (524) Uncertain_significance likely_benign NA
98 1:7820171 A C N/T (572) Uncertain_significance NA 0.000183843
99 1:7820171 A C N/T (564) Uncertain_significance likely_benign 0.000183843
100 1:7820176 A G T/A (574) Uncertain_significance NA NA
101 1:7820176 A G T/A (566) Uncertain_significance likely_benign NA
102 1:7820560 C T T/M (626) Uncertain_significance NA 1.31334E-5
103 1:7820560 C T T/M (618) Uncertain_significance likely_benign 1.31334E-5
104 1:7820598 G A G/S (639) Likely_benign NA 4.59698E-5
105 1:7820598 G A G/S (631) Likely_benign likely_benign 4.59698E-5
106 1:7820622 G C V/L (647) Uncertain_significance NA NA
107 1:7820622 G C V/L (639) Uncertain_significance likely_benign NA
108 1:7820623 T G V/G (647) Likely_benign NA 0.157107
109 1:7820623 T G V/G (639) Likely_benign likely_benign 0.157107
110 1:7826560 G A V/M (680) Uncertain_significance NA 3.94042E-5
111 1:7826560 G A V/M (672) Uncertain_significance likely_benign 3.94042E-5
112 1:7826645 C T S/L (708) Uncertain_significance NA 4.59758E-5
113 1:7826645 C T S/L (700) Uncertain_significance likely_benign 4.59758E-5
114 1:7826690 C T A/V (723) Likely_benign NA 0.000892482
115 1:7826690 C T A/V (715) Likely_benign likely_benign 0.000892482
116 1:7827157 G A R/K (743) Likely_benign NA 6.56633E-6
117 1:7827157 G A R/K (735) Likely_benign likely_benign 6.56633E-6
118 1:7827163 G A G/E (745) Uncertain_significance NA NA
119 1:7827163 G A G/E (737) Uncertain_significance likely_benign NA
120 1:7827174 C T R/W (749) Benign NA 0.00623999
121 1:7827174 C T R/W (741) Benign likely_benign 0.00623999
122 1:7827181 A G K/R (751) Uncertain_significance NA 6.56082E-6
123 1:7827181 A G K/R (743) Uncertain_significance likely_benign 6.56082E-6
124 1:7827187 C T P/L (753) Uncertain_significance NA NA
125 1:7827187 C T P/L (745) Uncertain_significance likely_benign NA
126 1:7827202 G A S/N (758) Benign/Likely_benign NA 0.00471748
127 1:7827202 G A S/N (750) Benign/Likely_benign likely_benign 0.00471748
128 1:7827207 A G S/G (760) Uncertain_significance NA 6.56056E-6
129 1:7827207 A G S/G (752) Uncertain_significance likely_benign 6.56056E-6
130 1:7827211 C T S/L (761) Uncertain_significance NA 5.2532E-5
131 1:7827211 C T S/L (753) Uncertain_significance likely_benign 5.2532E-5
132 1:7827220 G T G/V (764) Uncertain_significance NA NA
133 1:7827220 G T G/V (756) Uncertain_significance likely_benign NA
134 1:7827228 C T P/S (767) Conflicting_classifications_of_pathogenicity NA 0.000216521
135 1:7827228 C T P/S (759) Conflicting_classifications_of_pathogenicity likely_benign 0.000216521
136 1:7827241 C T A/V (771) Uncertain_significance NA 3.28317E-5
137 1:7827241 C T A/V (763) Uncertain_significance likely_benign 3.28317E-5
138 1:7827244 A G H/R (772) Likely_benign NA 9.19371E-5
139 1:7827244 A G H/R (764) Likely_benign likely_benign 9.19371E-5
140 1:7827295 C T S/L (789) Likely_benign NA 1.96998E-5
141 1:7827295 C T S/L (781) Likely_benign likely_benign 1.96998E-5
142 1:7827340 C T P/L (804) Uncertain_significance NA 1.96977E-5
143 1:7827340 C T P/L (796) Uncertain_significance likely_benign 1.96977E-5
144 1:7827361 C T P/L (811) Uncertain_significance NA 2.62633E-5
145 1:7827361 C T P/L (803) Uncertain_significance likely_benign 2.62633E-5
146 1:7827364 T C L/P (812) Likely_benign NA 0.000702367
147 1:7827364 T C L/P (804) Likely_benign likely_benign 0.000702367
148 1:7827384 G A G/R (819) Uncertain_significance NA 6.56625E-6
149 1:7827384 G A G/R (811) Uncertain_significance likely_benign 6.56625E-6
150 1:7827415 C T P/L (829) Likely_benign NA 6.56582E-6
151 1:7827415 C T P/L (821) Likely_benign likely_benign 6.56582E-6
152 1:7827417 G A E/K (830) Uncertain_significance NA NA
153 1:7827417 G A E/K (822) Uncertain_significance likely_benign NA
154 1:7827430 G A G/E (834) Uncertain_significance NA NA
155 1:7827430 G A G/E (826) Uncertain_significance likely_benign NA
156 1:7827439 T G L/W (837) Benign NA 0.00258503
157 1:7827439 T G L/W (829) Benign likely_benign 0.00258503
158 1:7827456 C T P/S (843) Likely_benign NA 0.000275554
159 1:7827456 C T P/S (835) Likely_benign likely_benign 0.000275554
160 1:7827457 C T P/L (843) Uncertain_significance NA 1.96974E-5
161 1:7827457 C T P/L (835) Uncertain_significance likely_benign 1.96974E-5
162 1:7827459 T A Y/N (844) Uncertain_significance NA NA
163 1:7827459 T A Y/N (836) Uncertain_significance likely_benign NA
164 1:7827463 C T P/L (845) Uncertain_significance NA 3.28304E-5
165 1:7827463 C T P/L (837) Uncertain_significance likely_benign 3.28304E-5
166 1:7827478 C A P/H (850) Uncertain_significance NA NA
167 1:7827478 C A P/H (842) Uncertain_significance likely_benign NA
168 1:7827513 G C D/H (862) Uncertain_significance NA 0.00104331
169 1:7827513 G C D/H (854) Uncertain_significance likely_benign 0.00104331
170 1:7827573 A G T/A (882) Likely_benign NA 3.93721E-5
171 1:7827573 A G T/A (874) Likely_benign likely_benign 3.93721E-5
172 1:7827586 C T A/V (886) Uncertain_significance NA 1.3134E-5
173 1:7827586 C T A/V (878) Uncertain_significance likely_benign 1.3134E-5
174 1:7827588 A G I/V (887) Uncertain_significance NA 2.6274E-5
175 1:7827588 A G I/V (879) Uncertain_significance likely_benign 2.6274E-5
176 1:7827609 G C A/P (894) Uncertain_significance NA 5.25376E-5
177 1:7827609 G C A/P (886) Uncertain_significance likely_benign 5.25376E-5
178 1:7827617 T G S/R (896) Uncertain_significance NA 1.31397E-5
179 1:7827617 T G S/R (888) Uncertain_significance likely_benign 1.31397E-5
180 1:7827622 C G T/S (898) Uncertain_significance NA 1.96998E-5
181 1:7827622 C G T/S (890) Uncertain_significance likely_benign 1.96998E-5
182 1:7827625 T C L/P (899) Uncertain_significance NA 7.88074E-5
183 1:7827625 T C L/P (891) Uncertain_significance likely_benign 7.88074E-5
184 1:7827696 C A P/T (923) Uncertain_significance NA 3.94006E-5
185 1:7827696 C A P/T (915) Uncertain_significance likely_benign 3.94006E-5
186 1:7827778 A T D/V (950) Uncertain_significance NA 6.56651E-6
187 1:7827778 A T D/V (942) Uncertain_significance likely_benign 6.56651E-6
188 1:7827779 T A D/E (950) Uncertain_significance NA 2.62702E-5
189 1:7827779 T A D/E (942) Uncertain_significance likely_benign 2.62702E-5
190 1:7827780 C A Q/K (951) Uncertain_significance NA 6.56685E-6
191 1:7827780 C A Q/K (943) Uncertain_significance likely_benign 6.56685E-6
192 1:7829855 G A G/S (969) Likely_benign NA 1.96985E-5
193 1:7829855 G A G/S (970) Likely_benign NA 1.96985E-5
194 1:7829855 G A G/S (961) Likely_benign likely_benign 1.96985E-5
195 1:7830056 A G M/V (1018) Uncertain_significance NA 2.63737E-5
196 1:7830056 A G M/V (1037) Uncertain_significance NA 2.63737E-5
197 1:7830056 A G M/V (1028) Uncertain_significance likely_benign 2.63737E-5
198 1:7830057 T C M/T (1018) Likely_benign NA 0.232084
199 1:7830057 T C M/T (1037) Likely_benign NA 0.232084
200 1:7830057 T C M/T (1028) Likely_benign likely_benign 0.232084
201 1:7830063 T C L/S (1020) Likely_benign NA 0.00142398
202 1:7830063 T C L/S (1039) Likely_benign NA 0.00142398
203 1:7830063 T C L/S (1030) Likely_benign likely_benign 0.00142398
204 1:7830075 G A R/K (1024) Uncertain_significance NA 3.28554E-5
205 1:7830075 G A R/K (1043) Uncertain_significance NA 3.28554E-5
206 1:7830075 G A R/K (1034) Uncertain_significance likely_benign 3.28554E-5
207 1:7830093 C T T/I (1030) Conflicting_classifications_of_pathogenicity NA 0.00137779
208 1:7830093 C T T/I (1049) Conflicting_classifications_of_pathogenicity NA 0.00137779
209 1:7830093 C T T/I (1040) Conflicting_classifications_of_pathogenicity likely_benign 0.00137779
210 1:7830096 C T A/V (1031) Uncertain_significance NA 7.22268E-5
211 1:7830096 C T A/V (1050) Uncertain_significance NA 7.22268E-5
212 1:7830096 C T A/V (1041) Uncertain_significance likely_benign 7.22268E-5
213 1:7830119 C T P/S (1039) Uncertain_significance NA 0.00013122
214 1:7830119 C T P/S (1058) Uncertain_significance NA 0.00013122
215 1:7830119 C T P/S (1049) Uncertain_significance likely_benign 0.00013122
216 1:7830128 G A E/K (1042) Uncertain_significance NA 7.88022E-5
217 1:7830128 G A E/K (1061) Uncertain_significance NA 7.88022E-5
218 1:7830128 G A E/K (1052) Uncertain_significance likely_benign 7.88022E-5
219 1:7830134 C G P/A (1044) Uncertain_significance NA NA
220 1:7830134 C G P/A (1063) Uncertain_significance NA NA
221 1:7830134 C G P/A (1054) Uncertain_significance likely_benign NA
222 1:7830144 C A T/N (1047) Uncertain_significance NA NA
223 1:7830144 C A T/N (1066) Uncertain_significance NA NA
224 1:7830144 C A T/N (1057) Uncertain_significance likely_benign NA
225 1:7835773 A G S/G (1057) Uncertain_significance NA 4.59619E-5
226 1:7835773 A G S/G (1076) Uncertain_significance NA 4.59619E-5
227 1:7835773 A G S/G (1067) Uncertain_significance likely_benign 4.59619E-5
228 1:7835781 A G I/M (1059) Uncertain_significance NA 3.28054E-5
229 1:7835781 A G I/M (1078) Uncertain_significance NA 3.28054E-5
230 1:7835781 A G I/M (1069) Uncertain_significance likely_benign 3.28054E-5
231 1:7835872 G A A/T (1090) Uncertain_significance NA 1.97031E-5
232 1:7835872 G A A/T (1109) Uncertain_significance NA 1.97031E-5
233 1:7835872 G A A/T (1100) Uncertain_significance likely_benign 1.97031E-5
234 1:7835899 C T R/W (1099) Uncertain_significance NA NA
235 1:7835899 C T R/W (1118) Uncertain_significance NA NA
236 1:7835899 C T R/W (1109) Uncertain_significance likely_benign NA
237 1:7835906 C T T/I (1101) Likely_benign NA 0.000675826
238 1:7835906 C T T/I (1120) Likely_benign NA 0.000675826
239 1:7835906 C T T/I (1111) Likely_benign likely_benign 0.000675826
240 1:7835915 G A R/H (1104) Uncertain_significance NA 2.62495E-5
241 1:7835915 G A R/H (1123) Uncertain_significance NA 2.62495E-5
242 1:7835915 G A R/H (1114) Uncertain_significance likely_benign 2.62495E-5
243 1:7835920 C T L/F (1106) Uncertain_significance NA NA
244 1:7835920 C T L/F (1125) Uncertain_significance NA NA
245 1:7835920 C T L/F (1116) Uncertain_significance likely_benign NA
246 1:7835927 C T T/I (1108) Uncertain_significance NA 1.31334E-5
247 1:7835927 C T T/I (1127) Uncertain_significance NA 1.31334E-5
248 1:7835927 C T T/I (1118) Uncertain_significance likely_pathogenic 1.31334E-5
249 1:7837036 C G L/V (1127) Uncertain_significance NA 7.8825E-5
250 1:7837036 C G L/V (1146) Uncertain_significance NA 7.8825E-5
251 1:7837036 C G L/V (1137) Uncertain_significance likely_benign 7.8825E-5
252 1:7837076 G T G/V (1140) Uncertain_significance NA 5.90613E-5
253 1:7837076 G T G/V (1159) Uncertain_significance NA 5.90613E-5
254 1:7837076 G T G/V (1150) Uncertain_significance likely_benign 5.90613E-5
255 1:7837114 C A Q/K (1153) Uncertain_significance NA NA
256 1:7837114 C A Q/K (1172) Uncertain_significance NA NA
257 1:7837114 C A Q/K (1163) Uncertain_significance likely_benign NA
258 1:7837138 A G I/V (1161) Uncertain_significance NA 1.31334E-5
259 1:7837138 A G I/V (1180) Uncertain_significance NA 1.31334E-5
260 1:7837138 A G I/V (1171) Uncertain_significance likely_benign 1.31334E-5
261 1:7842676 G C C/S (1166) Benign NA 0.0104994
262 1:7842676 G C C/S (1185) Benign NA 0.0104994
263 1:7842676 G C C/S (1176) Benign ambiguous 0.0104994
264 1:7842678 G T V/F (1167) Uncertain_significance NA NA
265 1:7842678 G T V/F (1186) Uncertain_significance NA NA
266 1:7842678 G T V/F (1177) Uncertain_significance likely_benign NA
267 1:7842681 A G T/A (1168) Uncertain_significance NA 2.62702E-5
268 1:7842681 A G T/A (1187) Uncertain_significance NA 2.62702E-5
269 1:7842681 A G T/A (1178) Uncertain_significance likely_benign 2.62702E-5
270 1:7842729 C A Q/K (1184) Uncertain_significance NA 1.97039E-5
271 1:7842729 C A Q/K (1203) Uncertain_significance NA 1.97039E-5
272 1:7842729 C A Q/K (1194) Uncertain_significance likely_benign 1.97039E-5
Disease Associations
S.No.Disease NameOntology IDSource
1 Bipolar Disorders MONDO_0004985 Disgenet
2 Breast Neoplasms MONDO_0021100 Disgenet
3 Depressive neurosis MONDO_0002050 Disgenet
4 Depression MONDO_0002050 Disgenet
5 Affective Disorder, Seasonal MONDO_0000694 Disgenet